PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0135s0079.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 211aa    MW: 23096.7 Da    PI: 9.2656
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0135s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17958255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa+a++ a++ l+g
  Kalax.0135s0079.1.p  9 RFLGVRQRP-SGRWVAEIKDTS---QKLRLWLGTFDKAEEAAAAYDSAARLLRG 58
                         678******.7*********42...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.57E-17867No hitNo description
SMARTSM003805.6E-32972IPR001471AP2/ERF domain
PROSITE profilePS5103219.941966IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-191067IPR016177DNA-binding domain
PRINTSPR003676.3E-71021IPR001471AP2/ERF domain
PfamPF008471.3E-101058IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-281066IPR001471AP2/ERF domain
PRINTSPR003676.3E-73248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
INKGLIKTRF LGVRQRPSGR WVAEIKDTSQ KLRLWLGTFD KAEEAAAAYD SAARLLRGRN  60
AKTNFPAGHG VMGTQENCNL LRKNPRLYNL LQHAVLKNQA RSRSVYPWRC PSTSSNQGRY  120
NETETGSTVG FDTLVEETIN ACGSSLSDQN NDRVLNINGF VFPSSCSSSS KVYSSVVVAP  180
SFSTCFNEED RPQEEKGSYI TGCGTSQGAQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-14466972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393384.31e-62ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A498I3A31e-60A0A498I3A3_MALDO; Uncharacterized protein
STRINGXP_008393384.18e-62(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-19related to AP2 11