PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0135s0084.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 500aa    MW: 55139.8 Da    PI: 4.8352
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0135s0084.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.1e-12171195327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           e C +++r+G CkyG +CkF+H+p
  Kalax.0135s0084.1.p 171 AEDCYYYLRMGSCKYGLSCKFNHPP 195
                          689********************97 PP
2zf-CCCH23.88e-08219242427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C++++  G Ck+G  C+F+H++
  Kalax.0135s0084.1.p 219 VECKYYLSAGGCKHGKACRFSHSR 242
                          68********************95 PP
3zf-CCCH33.85.8e-11263287226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++r+G Cky ++C+F+H+
  Kalax.0135s0084.1.p 263 GEKECPYYMRNGSCKYAATCRFNHP 287
                          7899********************9 PP
4zf-CCCH32.12e-10386412127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C ff++tG Ck+ ++CkF+H++
  Kalax.0135s0084.1.p 386 PGQPECTFFLKTGDCKFRSKCKFHHPK 412
                          5789*********************96 PP
5zf-CCCH28.52.7e-09432457227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C +++ +G+Ck+G++C++ H+p
  Kalax.0135s0084.1.p 432 GQSICAHYSNYGICKFGPKCRYDHPP 457
                          7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.878168196IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6168195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5169196IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9171195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4174194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.957215243IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026215242IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-6219242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5220244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5221243IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5261288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54261289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.3E-5263289IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-8263287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4267286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493385413IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-4385412IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-6387412IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5389414IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6427455IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4430457IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821430458IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6432457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001434455IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEVPEPISTP DSDQRQPPTH GSQSPLPDQF GDDPKSPPPA PLTEEFQAVL NLKEDAAPDA  60
GEDSDGGHVN GVSDQEEEEE DVGGVIESEN ETGKDGEMEK AENGEQEEEI VKDGWSDDQC  120
GRVGGVREEE DSGDGYQVDG WSNGNGVGET ELKEEVQGRD MQLQYPLRPG AEDCYYYLRM  180
GSCKYGLSCK FNHPPRRRNL TLKPRMKERE HNSERPMQVE CKYYLSAGGC KHGKACRFSH  240
SRERPTVVPV SEYNFLGLPI RPGEKECPYY MRNGSCKYAA TCRFNHPDPT AGSNSPSGYA  300
NDEQASPWSP SMPSNEAVPF VSASYTLAQG AHSHIYEWKG YQGPAFTAEK SFMPSPAFGL  360
SIPPMERSAY SDFQPQLASE EFPERPGQPE CTFFLKTGDC KFRSKCKFHH PKDQTLQLSC  420
AMTDKGLPLR PGQSICAHYS NYGICKFGPK CRYDHPPAIQ HTPPPAMTGL GHPRNPFSNF  480
ASPENASRLS SIGEGTITL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019457493.11e-123PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
SwissprotQ5RJC51e-105C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A4P1RTQ31e-122A0A4P1RTQ3_LUPAN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-107C3H family protein