PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0136s0030.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 364aa MW: 40664.9 Da PI: 6.6104

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0136s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.1	3.3e-12	75	108	2	35
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekv 35 +++k++rr+++NReAAr+sR+RKka++++Le+ Kalax.0136s0030.1.p 75 PADKVQRRLAQNREAARKSRLRKKAYVQQLETSR 108 689****************************854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.9E-9	73	123	No hit	No description
SMART	SM00338	2.3E-8	74	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.841	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.6E-9	76	107	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.06E-7	78	123	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.3E-31	166	239	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MQSPASHFLP MTGMGMYDPV NHIGMWAENF KGNGFTITSP STTLEVNTKL DNQSEDTSNG 60 TFGHATNYDE ETTKPADKVQ RRLAQNREAA RKSRLRKKAY VQQLETSRLR LIQLEQELHQ 120 TRQQGFNAGG GLGASHSGFS GAVNSGITTF QMEYGRWVEK NNKQVIELRN ALNSYQSDAD 180 LETLVDNVMK HYFELFQMKQ TAAKADVFYL MSGMWKTTAE RFFLWIGGFR PSELLKVLVP 240 QLDPLAENQL LDICNLRRSC QQAEDALSQG LDKLQEIVVD TLAAGGQMDE GSSIPQIAAT 300 MDKLGDLVSF VNQADHLRKE TLNQMSHILT THQTARGLLA LGDYLERLRA LSSLWAARQR 360 EAA*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MQSPASHFLP MTGMGMYDPV NHIGMWAENF KGNGFTITSP STTLEVNTKL DNQSEDTSNG  60
TFGHATNYDE ETTKPADKVQ RRLAQNREAA RKSRLRKKAY VQQLETSRLR LIQLEQELHQ  120
TRQQGFNAGG GLGASHSGFS GAVNSGITTF QMEYGRWVEK NNKQVIELRN ALNSYQSDAD  180
LETLVDNVMK HYFELFQMKQ TAAKADVFYL MSGMWKTTAE RFFLWIGGFR PSELLKVLVP  240
QLDPLAENQL LDICNLRRSC QQAEDALSQG LDKLQEIVVD TLAAGGQMDE GSSIPQIAAT  300
MDKLGDLVSF VNQADHLRKE TLNQMSHILT THQTARGLLA LGDYLERLRA LSSLWAARQR  360
EAA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021275232.1	0.0	transcription factor TGA1-like
Refseq	XP_021275233.1	0.0	transcription factor TGA1-like
Refseq	XP_021275234.1	0.0	transcription factor TGA1-like
Refseq	XP_021275235.1	0.0	transcription factor TGA1-like
Swissprot	Q39162	1e-167	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A061DI74	0.0	A0A061DI74_THECC; BZIP transcription factor family protein isoform 1
STRING	EOX92234	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-170	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Kalax.0136s0030.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]