PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0136s0108.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 240aa MW: 25775.2 Da PI: 10.0554

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0136s0108.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	70.8	2.9e-22	59	132	28	100
DUF260 28 kkfanv.hklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + f+n+ +++FGasnv+kll ++pe r da+++lvyeA++r+rdPvyG++g i +lqqql +l+a+l+++++e Kalax.0136s0108.1.p 59 QLFKNLgRRVFGASNVSKLLLEAPEGLRADAANTLVYEANVRIRDPVYGCMGAIAALQQQLLSLQAQLDAVRAE 132 566665379************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.034	23	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-20	66	130	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MPLCDYYYSR SQNAAFASKV DIHTCASSWQ MVIDNELLQV SLQLIIRRAS RLSQKTSLQL 60 FKNLGRRVFG ASNVSKLLLE APEGLRADAA NTLVYEANVR IRDPVYGCMG AIAALQQQLL 120 SLQAQLDAVR AEILKHDVKI SQAPAASSAP SISSKNSTIA LAAIPNNNIS IQTSTTHHHQ 180 AVAMPMPPPP SPSEHPRRPR TPPLHSASAQ SGSSNSSALS TSSTTVTTSS LYSTQQRDK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-21	59	136	38	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-21	59	136	38	114	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-22	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Kalax.0136s0108.1.p