PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0136s0132.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 711aa    MW: 78282.8 Da    PI: 6.5104
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0136s0132.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.2e-19136235198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++  
  Kalax.0136s0132.3.p 136 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGTPIRIQDAKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSR-- 222
                          99**************************556667788***************9989999999***9.********************4.. PP

                          S.SEE..EEEEE- CS
                   B3  87 r.sefelvvkvfr 98 
                          r  +++lv++ ++
  Kalax.0136s0132.3.p 223 RdPGGKLVIGSRK 235
                          4499999998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-29131236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-20133233IPR015300DNA-binding pseudobarrel domain
CDDcd100173.32E-23134231No hitNo description
PfamPF023622.0E-16136235IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462136237IPR003340B3 DNA binding domain
SMARTSM010192.3E-20136236IPR003340B3 DNA binding domain
PROSITE profilePS5105013.487392442IPR011124Zinc finger, CW-type
PfamPF074965.9E-8397439IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MNGEDQSFGD LSSNFLNLNS QSVGSPHFYI AGGNVTLGVP DGYEAIPQTS LNIGLSTPPD  60
PSNFSAKFSS GVVEGRELIK LPSPFQQSQR SRPRVARPPA EGRGRNQLLP RYWPRITDQE  120
LQQLSGDLNS PVVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQSEG TPIRIQDAKG  180
KEWTFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVIF SRRDPGGKLV IGSRKASISS  240
DTQDGDIAAL ANGAHGESSF SDVSAACGYS GTFQSMAKNR DPHMHALPEQ MTVADINLGW  300
SKNNRHRGRI IESPIQKSMV KRPKNISSKS RRLLLHAEDV LELKLTWDEA QDLLRAPPSI  360
KPSIVTVEDY EIEEFEEPPV LAKKTIFTVG ASGGQEQWAQ CDFCSKWRRL PVDVLLPLKW  420
TCAENFWDSC RCSCSVPDEV GAKELENLLK HGKDLKRPRT LENHKLVQDH EPSGLDALAS  480
AAVLGDNAGE AGETSVGATT KHPRHRPGCT CIVCIQPPSG KGKHHPTCTC NVCMTVKRRF  540
KTLMFRKRIR QSEREAEVSQ KEPVLPKENY ELTNLKGDSR HEMLQSHPVE ADADRTTQNL  600
VQVDQSSDNS DRQLDLNSHP NRGSKCLEQE MNAAVSMTRL VHAAVLPLES HLKQHGLANS  660
TLDASGPPQT IEEGDYGVAD EDDTVQSGSV IKDEDRSSHA NQDQNVDEKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-701142432131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983612.10.0PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A061GYW30.0A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
STRINGEOY347050.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]