PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0137s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 27929 Da    PI: 10.1672
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0137s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.62.4e-26960151
                         S---SHHHHH.HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrq.vtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrq vtfs Rr+g+lKKA+E+SvLCdaeva+iifs++gkl++y++
  Kalax.0137s0039.1.p  9 KRIENKINRQrVTFSERRTGLLKKANEISVLCDAEVALIIFSTKGKLFDYAT 60
                         79******988***************************************86 PP
2K-box99.83.9e-3384172997
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          ++ + + s++ e+a+Lk++i++Lq++q h++GedL+sL+lkeLq+Le+qLe++lk+iR+kK++l++e+i++l+kk k+lq +n++L k+
  Kalax.0137s0039.1.p  84 TDIESNGSWHLEHARLKARIDTLQKKQSHYMGEDLNSLTLKELQNLENQLENALKHIRAKKSQLMFESISDLKKKDKALQGQNTKLAKQ 172
                          55566789******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-34161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.259162IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-29292IPR002100Transcription factor, MADS-box
CDDcd002653.33E-36275No hitNo description
PRINTSPR004045.6E-15323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-201058IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-153960IPR002100Transcription factor, MADS-box
PfamPF014863.2E-2788172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.19389182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGRVQMKR IENKINRQRV TFSERRTGLL KKANEISVLC DAEVALIIFS TKGKLFDYAT  60
DSCMGRILER YERYSCAETQ LVATDIESNG SWHLEHARLK ARIDTLQKKQ SHYMGEDLNS  120
LTLKELQNLE NQLENALKHI RAKKSQLMFE SISDLKKKDK ALQGQNTKLA KQPLQIKEKE  180
KSKGTLMDQQ SHAASPASLR APQICLGPLT VSRGNLYHGA GDGGAASSAL HQNSATTLLP  240
RWMLSHLGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19186184MEF2 CHIMERA
6byy_B2e-19186184MEF2 CHIMERA
6byy_C2e-19186184MEF2 CHIMERA
6byy_D2e-19186184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312134.11e-102agamous-like MADS-box protein AGL8 homolog
RefseqXP_009625854.11e-102PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ424291e-96AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1S3YGF61e-101A0A1S3YGF6_TOBAC; agamous-like MADS-box protein AGL8 homolog
STRINGXP_009625854.11e-101(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-82AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]