PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0137s0045.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 202aa    MW: 22850 Da    PI: 9.3395
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0137s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84.1e-131241942093
                          HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3  20 kkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          k+ +++h  ++ke ++ +tlede+g++  +k+ +++++    l++GW++F+ +++L +gD +vF+l++ ++f+ +
  Kalax.0137s0045.1.p 124 KPMVQSHaHMSKEDEMNITLEDEDGNESPIKYLVDRTG----LSGGWRGFALDHELVDGDALVFQLIRPTKFKSL 194
                          5566677756678899****************777777....************************998887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-14116191IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-16120192No hitNo description
SMARTSM010197.6E-8122198IPR003340B3 DNA binding domain
PfamPF023625.2E-11124192IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-10130192IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.614141199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVVSATSNYE ELRRQRLEEN KKRMEEVSLL NLSKFLSAAT PKSSPAKHRK PKSARKEVDL  60
SAVRRSRRMA GKSRPDYKEG MRLMLSRGDL LNHVYASDES RVSAVKRAEQ LESELGFEYP  120
CFVKPMVQSH AHMSKEDEMN ITLEDEDGNE SPIKYLVDRT GLSGGWRGFA LDHELVDGDA  180
LVFQLIRPTK FKSLSSVSDP F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019074156.12e-74PREDICTED: B3 domain-containing protein At3g19184 isoform X2
SwissprotQ1G3M32e-47Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLF6HQC13e-73F6HQC1_VITVI; Uncharacterized protein
STRINGVIT_03s0063g00620.t016e-74(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-50B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]