PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0137s0079.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 209aa    MW: 23198 Da    PI: 5.2851
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0137s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC29.31.9e-091011851699
                NF-YC  16 fknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                           ++  +P+ ri+ i k++ ed  ++s ea  ll ka e f+ +l   ++ ++ + +++ +    ++a+v++ +   fl d +p++
  Kalax.0137s0079.1.p 101 GAKCLFPMNRIRMIAKSEgEDDMRLSHEAIFLLNKASEKFLGHLCEEAYGETVNERKNFVAYDHLSASVSKNQRLRFLSDLIPEK 185
                          456679**********983455569********************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.79E-13100186IPR009072Histone-fold
PfamPF008081.8E-10106168IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.5E-18106184IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRNTRSTPRK GQKPTTKTKK KGHVSNGDVT EAEVACPAAL SSPDSLPEPP DSDSVGSDNK  60
SIAEEEDEVE EGAEEQEVEV VKKKTVLKQN GKKRKVEEEE GAKCLFPMNR IRMIAKSEGE  120
DDMRLSHEAI FLLNKASEKF LGHLCEEAYG ETVNERKNFV AYDHLSASVS KNQRLRFLSD  180
LIPEKISVEE ALKERQLANC DPRAPTTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2byk_A1e-139619010104CHRAC-16
2byk_C1e-139619010104CHRAC-16
2bym_A1e-139619010104CHRAC-16
2bym_C1e-139619010104CHRAC-16
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18293KKTVLKQNGKKR
28694LKQNGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGcassava4.1_015531m6e-29(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.18e-26nuclear factor Y, subunit C10