PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0138s0062.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 366aa    MW: 39783 Da    PI: 7.0041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0138s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12305350655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+     +k  s +++L +Av+YIk+Lq
  Kalax.0138s0062.1.p 305 SIAERVRRTKISEKMRKLQELVPNM----DKQTSTSDMLDLAVDYIKDLQ 350
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.053299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16302362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.24E-13303354No hitNo description
Gene3DG3DSA:4.10.280.109.4E-15304360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-13305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDADLQQAHQ FNPIAAGCGL TRYKSAPTSY FSSFVMDYKD VLRPPPPKPL SPQFDRIFAQ  60
LAAEISGDHA LDVDATTPVA KHQIEQPEQL MMASYTPSAA LPPPHPLSRT SSGVDAFYRG  120
LKPSAPAPPV RIPVVQKQSS SSNLARHNSL PSGLFSKIDV HNVAAAYFGA GSSRANSSAD  180
LMSGYSGIGD DNTKQSNPEE GDDYMINGFW NDSSSTEKLL TGVKRERAED ELLKGGVLDD  240
VKPFSGESNI PGGEVKKPGL LSHHLSLPKS SMEILSAMEK FLELPDTTVP VGVRARRGCA  300
THPRSIAERV RRTKISEKMR KLQELVPNMD KQTSTSDMLD LAVDYIKDLQ ERVQILKACS  360
ERCTC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.14e-44bHLH family protein