PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0138s0066.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 366aa    MW: 41235.9 Da    PI: 7.0931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0138s0066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028206225120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C k+F+r  n++ H+
  Kalax.0138s0066.1.p 206 FSCHLCFKTFNRYNNMQMHM 225
                          89*****************9 PP
2zf-C2H214.50.00011290312123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk F  + + ++H +++
  Kalax.0138s0066.1.p 290 FMCRKCGKAFAVRGDWRTHEKNC 312
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556206233IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-4206225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-6272310No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5286310IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808290310IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MMNDNHPYYS NQFNNGFFYS SAPSSSSSQS FTNPTIPAHI NNNFYLSYFN NNLKNCYNFN  60
NSNSFTPHHC NQLPTPPPSP PLRQALPLLS LSPTRHKNIE QKQHHDADQE IDHQEVMVED  120
GDEVEDDGCL LSIDLQLGLP DICASSSADL LNISSSISSS VDEGGVIIAD SSNCSGYEST  180
TPTTRLNKGQ YWIPTPAQIL IGPTQFSCHL CFKTFNRYNN MQMHMWGHGS QYRRGPESLR  240
GTQPTAMLRL PCYCCSPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGMKPF MCRKCGKAFA  300
VRGDWRTHEK NCGKLWYCTC GSDFKHKRSL KDHIRAFGNG HAAYGIDCFD QEDDEAALSD  360
IEQDS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384541.21e-149zinc finger protein WIP2-like
SwissprotQ8W0311e-129ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A498IPH81e-147A0A498IPH8_MALDO; Uncharacterized protein
STRINGXP_008384541.11e-147(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]