PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0139s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 356aa    MW: 39932.8 Da    PI: 6.3485
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0139s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.78.1e-48191481128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp+GfrF+Ptde++v +yL +k+ ++++++  +i ++d +k+ePwdLpk ++ +e+e y++ + d++y+tg r+nratk+g+Wkatgkdk
  Kalax.0139s0010.1.p  19 LPRGFRFRPTDEDIVYHYLIPKAMNSNFST-AAIGQADFNKCEPWDLPKIAYMGETERYYYRQMDRRYPTGLRTNRATKAGFWKATGKDK 107
                          799************************999.78***************88888999********************************** PP

                  NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++    ++elvg+kktLvfy+grap+gekt+Wvmheyrl
  Kalax.0139s0010.1.p 108 EIYKGagnRRELVGTKKTLVFYTGRAPRGEKTNWVMHEYRL 148
                          ***987777788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-5615172IPR003441NAC domain
PROSITE profilePS5100550.83419171IPR003441NAC domain
PfamPF023653.0E-2320148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MANSSKAARV LTEEDLMGLP RGFRFRPTDE DIVYHYLIPK AMNSNFSTAA IGQADFNKCE  60
PWDLPKIAYM GETERYYYRQ MDRRYPTGLR TNRATKAGFW KATGKDKEIY KGAGNRRELV  120
GTKKTLVFYT GRAPRGEKTN WVMHEYRLQP HFSSPMIPKN DGWAVCRVFH KNNHASGTGS  180
GSGVHEKTYC ACNSGSFSPL QRADSFSTDH LVRADFESLP PLVDLSAIPP PPPNMSSQLV  240
IQDLKPAMIS HDYSGCTQPQ PDANMWPPTD AYDDDQLIYS DMPAYYYSSI SATLLQTPVP  300
FGYELPEDEN NNVVGAPMEV SECKPRPPQC ATSAEISSRD QEHDNEMMSF LHPSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-431717515169NO APICAL MERISTEM PROTEIN
1ut4_B3e-431717515169NO APICAL MERISTEM PROTEIN
1ut7_A3e-431717515169NO APICAL MERISTEM PROTEIN
1ut7_B3e-431717515169NO APICAL MERISTEM PROTEIN
3swm_A4e-431717518172NAC domain-containing protein 19
3swm_B4e-431717518172NAC domain-containing protein 19
3swm_C4e-431717518172NAC domain-containing protein 19
3swm_D4e-431717518172NAC domain-containing protein 19
3swp_A4e-431717518172NAC domain-containing protein 19
3swp_B4e-431717518172NAC domain-containing protein 19
3swp_C4e-431717518172NAC domain-containing protein 19
3swp_D4e-431717518172NAC domain-containing protein 19
4dul_A3e-431717515169NAC domain-containing protein 19
4dul_B3e-431717515169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518044.14e-77PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9SQQ64e-78NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A0M4FBP61e-75A0A0M4FBP6_MANES; NAC transcription factors 15
TrEMBLA0A178VF111e-75A0A178VF11_ARATH; NAC046
STRINGXP_010518044.12e-76(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.12e-80NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]