PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0139s0058.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 316aa    MW: 33865.1 Da    PI: 7.5523
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0139s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015193215123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +Cg  F +   L  H+r+H
  Kalax.0139s0058.1.p 193 HECVICGAEFASGQALGGHMRRH 215
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-11126151IPR007087Zinc finger, C2H2
SuperFamilySSF576674.82E-7126149No hitNo description
SMARTSM003550.28127149IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221127154IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SuperFamilySSF576674.82E-7188215No hitNo description
PfamPF139127.3E-11192216IPR007087Zinc finger, C2H2
SMARTSM003550.11193215IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099193215IPR007087Zinc finger, C2H2
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDRGEISSGL VQNSIMKRKR SKRQRPLGGG GNSSSSEPDG MGDGRPDIVL TTTSSSSEDQ  60
LMMLGGSSEE EEEDREVAKC LILLAQGHCQ QTHVNSHRIG MEMMSSSRTR KPWLENKKRV  120
DGGGGVYECK TCSRSFHSFQ ALGGHRASHK KLKITTDDET PIVLPQKPAL KSSDTGVPPF  180
ADLQLGIRKI RVHECVICGA EFASGQALGG HMRRHRVTIA VNSPLETATK AAAAAADGIT  240
LSLLTSPAHV ETEEATSRSN NNEFQCFDLN LPATSSSEDA MGVDKFSFGS KQQKQLKDSG  300
LALSSPAPAL VDCHF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11522MKRKRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-39C2H2 family protein