PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0139s0066.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 292aa    MW: 32650.3 Da    PI: 9.2269
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0139s0066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.4e-1536127199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkvl+  d+  s+ l++p  fa+++ +  k ++k   le+ +  sW+v++  + ++++y+++kGW  Fv+an+++ gDf+vF l+g   
  Kalax.0139s0066.1.p  36 FFKVLIGDDY--SDKLRVPPFFAQKClD--KVSGKSFDLET-HCGSWTVEI-AQTGKRGYFFKKGWAAFVRANNIEFGDFLVFILTG--P 117
                          7888855444..5569*******99955..45666788777.888******.4555566*************************987..4 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          ++l+v++++k
  Kalax.0139s0066.1.p 118 RSLCVMMYDK 127
                          4458877766 PP
2B3376e-121862581290
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ++ +++l ++f+++ g+   + + + +++ +g sW v++    +++r  l++GW++F  +n+L +gD ++ ++++++++
  Kalax.0139s0066.1.p 186 NKYNMRLKRDFMRRSGLA--QMMNVEVTNGEGGSWPVEV--GSGGRR--LGGGWSKFWIDNNLAAGDRCMVRFTRDNSR 258
                          34459999*******988..77899999***********..555555..**********************99988665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-2033130IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1833130IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-1834126No hitNo description
PROSITE profilePS5086311.37834128IPR003340B3 DNA binding domain
PfamPF023621.8E-1336127IPR003340B3 DNA binding domain
SMARTSM010199.6E-936128IPR003340B3 DNA binding domain
PROSITE profilePS5086310.644175266IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-12176263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-13178265IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-4179268IPR003340B3 DNA binding domain
PfamPF023627.3E-9186258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGSRKRSTMA RQIDEIMLEE EESETLRGLL FSQPSFFKVL IGDDYSDKLR VPPFFAQKCL  60
DKVSGKSFDL ETHCGSWTVE IAQTGKRGYF FKKGWAAFVR ANNIEFGDFL VFILTGPRSL  120
CVMMYDKTAC VKNLVSLVGR RKKKKSNTHE PATAATKMFC DTTDEPAPTA TNGHCYEYCV  180
TLKKYNKYNM RLKRDFMRRS GLAQMMNVEV TNGEGGSWPV EVGSGGRRLG GGWSKFWIDN  240
NLAAGDRCMV RFTRDNSRQV EFLKLKGEAG QEKATPGGDH ELASDPFGSV G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RRKKKK
2224231GGRRLGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-14B3 family protein