PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0139s0078.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21445.1 Da    PI: 10.1902
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0139s0078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.12.3e-182872145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         k+ie++s   v+f+kRr g++ K +ELS+LC++++a+iifs+ gk
  Kalax.0139s0078.1.p 28 KKIEDSSASVVSFCKRRLGLFNKTSELSILCGVQIALIIFSHAGK 72
                         68****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-202080IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.822072IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-192194IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-122242IPR002100Transcription factor, MADS-box
PfamPF003195.1E-182977IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-124257IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-125778IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MADLIPITPN TINHHEKKTK GRRSIAIKKI EDSSASVVSF CKRRLGLFNK TSELSILCGV  60
QIALIIFSHA GKKPYSFGHP SVESLVGQFF AQEKSNANFP SKGNLDLNLT PSKCAMIQKL  120
CAELTQIKDQ VKIAEKRGDE LNRMRDARKT ENWWMKPLNN MNLSELKKCK KAMKELEAMI  180
PSSEISLDLA L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-31AGAMOUS-like 62