PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0141s0065.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 243aa    MW: 27374.2 Da    PI: 4.9209
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0141s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-16105155255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrd      k  r++lg+f+++ +Aaka++ a+ k++g
  Kalax.0141s0065.1.p 105 HYRGVRRRP-WGKFAAEIRDH---ArKGSRVWLGTFDSEVDAAKAYDFAAFKMRG 155
                          8********.**********4...3345**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.2E-30104164IPR001471AP2/ERF domain
CDDcd000186.28E-29104163No hitNo description
PfamPF008471.6E-11105155IPR001471AP2/ERF domain
PROSITE profilePS5103223.314105163IPR001471AP2/ERF domain
SMARTSM003802.0E-35105169IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22105164IPR016177DNA-binding domain
PRINTSPR003674.4E-13106117IPR001471AP2/ERF domain
PRINTSPR003674.4E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMDETSTLDL IRSHLLADFA STESFISSLH SDLLLDSTTG PYDAPFWSLF PVKPDTDTDY  60
NYNLLEFVKP EFFDIAPSQR EDTGKTSSSD SSRTETSSLP LDRKHYRGVR RRPWGKFAAE  120
IRDHARKGSR VWLGTFDSEV DAAKAYDFAA FKMRGSKAIL NFPLQAGKEE GPPENSCRRR  180
RRRRDSRAET TVTESASASS SCYFNSNDED NSIEPWTPSS ESLSYTTTMT MEDQMLLASY  240
MG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27104170470ATERF1
3gcc_A1e-27104170470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183RRRRRRR
2177184RRRRRRRD
3178186RRRRRRDSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022363.14e-48PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLA0A2P5BQJ35e-50A0A2P5BQJ3_PARAD; AP2/ERF transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-27ERF family protein