PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0142s0021.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 234aa    MW: 25487.5 Da    PI: 4.7394
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0142s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.6e-303289359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                         D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY+++Hnh+
  Kalax.0142s0021.1.p 32 DCWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSHVDPTMLIITYSSDHNHS 89
                         99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-312691IPR003657WRKY domain
SuperFamilySSF1182901.26E-252991IPR003657WRKY domain
SMARTSM007741.4E-343090IPR003657WRKY domain
PfamPF031061.5E-253288IPR003657WRKY domain
PROSITE profilePS5081131.3643291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
KRAAMKRVVS VPIKGMETAR GNKSGDGAPP GDCWAWRKYG QKPIKGSPYP RGYYRCSSSK  60
GCPARKQVER SHVDPTMLII TYSSDHNHSL PAAAASRNQP TNNGSASCET VDKAAVSNNS  120
DSKSAESGEA EQEQKVVDDR DHEQSMMLAM EDDFGWLSGL ESAAAPSFMM MESSMFGDDL  180
LLPLMGVEEE EELFADLGEL PECSSVFRRK AAAEVEERMS CADAKWFETT SLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-21392380Disease resistance protein RRS1
5w3x_D4e-21392380Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024988156.14e-63probable WRKY transcription factor 65 isoform X1
RefseqXP_024988157.16e-63probable WRKY transcription factor 65 isoform X2
TrEMBLA0A499SW951e-62A0A499SW95_9ROSI; WRKY transcription factor 2
STRINGXP_006467614.18e-62(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.18e-55WRKY DNA-binding protein 65