PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0142s0036.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 244aa    MW: 26230.1 Da    PI: 8.8116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0142s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-1362109354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+ +ErrRR+riN  +++Lr l+P+     s K++KaeiL +++  ++ L
  Kalax.0142s0036.1.p  62 KNHSDAERRRRERINAHLATLRGLVPST----SDKMDKAEILAEVITQVRRL 109
                          58*************************9....8**********999776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-1459115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.14259109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-1162109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-1262109No hitNo description
Gene3DG3DSA:4.10.280.103.0E-1462115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1165115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEFQITCGSG FGGGFDQFLL QGYCDQSSKA LVLDCERGEL VKAAGVLGKK GVSPAKSAEA  60
LKNHSDAERR RRERINAHLA TLRGLVPSTS DKMDKAEILA EVITQVRRLK KKAAEAAAGL  120
LIPLDADEVR VQAVEDQAGE GTTLCFKASI CCGYRPDLLP DLKLALSTLQ VSTQQMEMST  180
LGGRVKNEFV FSALRDWKLA KADEEKAIAA SIHGALSSVL DKAPPLQPYS PQTASQNKKR  240
KLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025402.13e-70PREDICTED: putative transcription factor bHLH107
TrEMBLA0A061GLQ36e-69A0A061GLQ3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
STRINGXP_010103039.11e-65(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-28bHLH family protein