PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0146s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 280aa    MW: 32443.6 Da    PI: 10.0517
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0146s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.42.1e-17124218190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                          +fY++YA+ vGF++rk++ kk +r++ +  +  +C+++g +  ++ +     +    r+ra++rtg +a++++k+  ++ + v+++ +eH
  Kalax.0146s0017.1.p 124 NFYKDYARIVGFQIRKATLKKASRSKYVSLHYIYCNRQGINIFKHFDslageSFVGFRRRASSRTGWRARVVLKRVGESSYIVKEFMKEH 213
                          6***************************************999988867666556677******************************** PP

                 FAR1  86 nHela 90 
                          nH+l+
  Kalax.0146s0017.1.p 214 NHPLT 218
                          ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-15124218IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRGDKLRPMK EERQASDGRL GFARPPTSLR PSPRNMSRPA KRGILVADRC RSWRVRDAFQ  60
GSDESNDSLS MNDVYANEIQ SSKDNVEDHV PRNTQDQQLS PSIDVHTHND TDGKLFENLI  120
NEINFYKDYA RIVGFQIRKA TLKKASRSKY VSLHYIYCNR QGINIFKHFD SLAGESFVGF  180
RRRASSRTGW RARVVLKRVG ESSYIVKEFM KEHNHPLTSP EYHEFLKSNR SLNYAQQNFV  240
MDCGNLKNWH KKISWDTERV IWRVCACWCT SGGCKELQT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-11FAR1 family protein