PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0146s0055.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 551aa    MW: 60480.3 Da    PI: 8.4599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0146s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH58.21.5e-18259308255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ Lre++P++    ++K +Ka+ L +A+eYI+ Lq
  Kalax.0146s0055.1.p 259 RSKHSATEQRRRSKINDRFQMLREIIPHS----DQKRDKASFLLEAIEYIQFLQ 308
                          889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.7E-23255324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.072257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18257316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-15259311No hitNo description
PfamPF000105.5E-16259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-13263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MELPRSFGPQ GTKPTHDFLS LYTTTSTTSH SQDPLLSPGS GSFLKTQNFL QPLEQVEMPG  60
VNDPAAISVN DKIQLPAASH LPPTSVEHIL PGGIGTYTIS HISCINQVSK PEVSLFTAAQ  120
ANSNERNDDN SNSSSQTGSG FTLWEESAVN MGKTGKENVR EGRSFVREPA SKLGKWAAER  180
PSQSSLNQRG SFAPASSSQV AAHKNQSLMN LIVSTTNTRE DENREMDFVI KKEGSPSERE  240
ESKMRAEGKN DERKANTPRS KHSATEQRRR SKINDRFQML REIIPHSDQK RDKASFLLEA  300
IEYIQFLQEK VYRYEGSFPG WNHESTKRIP LRNNHKPAKG FIDHGGPGTT SPFSTKFSDK  360
NIGAPSIVSR VVQKQVESDN NPIAFQMNDQ HLVRADMIVA SPIPLQPKVF VENGGTTTIF  420
PPKLVSDTET ATSQHTQRED VRRCEIECAT ASNDQELAIE GGTINISSTY SQGFLSTLTQ  480
ALQSLGVDLS QSRISVQIDL GKQNNIKLGS ATKMTKVDEL NSTSHVKANS TSPHISEYSG  540
QAVKRLKTGN *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080441.11e-160transcription factor BIM1 isoform X1
RefseqXP_012080442.11e-160transcription factor BIM1 isoform X2
TrEMBLA0A067KHS21e-159A0A067KHS2_JATCU; Uncharacterized protein
STRINGVIT_17s0000g04790.t011e-157(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.45e-77bHLH family protein