PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0147s0010.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 466aa MW: 51282.4 Da PI: 8.1733

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0147s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.3	2.4e-17	117	177	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Kalax.0147s0010.1.p 117 KPRWNPKPEQIRILEGIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKQ 177 89***************99***********************************996 PP
2	Wus_type_Homeobox	111.5	4.4e-36	116	178	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe +++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R++qk Kalax.0147s0010.1.p 116 PKPRWNPKPEQIRILEGIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKQK 178 689***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-12	111	181	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.446	113	178	IPR001356	Homeobox domain
SMART	SM00389	8.0E-8	115	182	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.7E-7	116	185	IPR009057	Homeodomain-like
CDD	cd00086	7.17E-8	116	179	No hit	No description
Pfam	PF00046	6.4E-15	117	177	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MGLNVKSVYV TVVRYHHHHT YPKQKEITLA CFDPSSSHFS LAGWLYSYTA FHLSATTIEN 60 IINSIMASSN RHWPSMFKSK PCNPHQQWPH EFSSSLLTGC HRNPYTSGIE ERSPEPKPRW 120 NPKPEQIRIL EGIFNSGMVN PPRDEIRKIR AQLQEYGQVG DANVFYWFQN RKSRSKQKNR 180 QVPKSQQNQS NQPAAGRTTT NPSIPATTPA NASTSIKASS SSSSDKSSPK LINSSKNSTS 240 PAGFSLGSCS SNLLDQLAYS PATSVNQNYD HLVQHDQPFM FPLQHLNFTA QGFPGFPDHQ 300 QIMMTNSNNN NLINNNVPHS VGPCTEFLFS ELISSQHGVG SDPKKDAEDE EKLMIMKLGF 360 STAPSAASTV GNNLPVSASN VMPLPSTLNQ LQGAGEYSGP VAVGPIKLTV FINDVAFEVN 420 CGPFHVREAF GDDAVLLHST GQPVLINEWG VTVQPLQHGA FYYLI*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MGLNVKSVYV TVVRYHHHHT YPKQKEITLA CFDPSSSHFS LAGWLYSYTA FHLSATTIEN  60
IINSIMASSN RHWPSMFKSK PCNPHQQWPH EFSSSLLTGC HRNPYTSGIE ERSPEPKPRW  120
NPKPEQIRIL EGIFNSGMVN PPRDEIRKIR AQLQEYGQVG DANVFYWFQN RKSRSKQKNR  180
QVPKSQQNQS NQPAAGRTTT NPSIPATTPA NASTSIKASS SSSSDKSSPK LINSSKNSTS  240
PAGFSLGSCS SNLLDQLAYS PATSVNQNYD HLVQHDQPFM FPLQHLNFTA QGFPGFPDHQ  300
QIMMTNSNNN NLINNNVPHS VGPCTEFLFS ELISSQHGVG SDPKKDAEDE EKLMIMKLGF  360
STAPSAASTV GNNLPVSASN VMPLPSTLNQ LQGAGEYSGP VAVGPIKLTV FINDVAFEVN  420
CGPFHVREAF GDDAVLLHST GQPVLINEWG VTVQPLQHGA FYYLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020230917.1	1e-122	WUSCHEL-related homeobox 9
TrEMBL	A0A061GG54	1e-119	A0A061GG54_THECC; Homeobox-3, putative
STRING	EOY28117	1e-120	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	7e-57	homeobox-3

Link Out ? help Back to Top
Phytozome	Kalax.0147s0010.1.p