PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0148s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 167aa    MW: 19052.3 Da    PI: 10.2884
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0148s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.1e-08961351054
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+RR+ri +++  L++l+P       +K++ a++L +A++Y+  L
  Kalax.0148s0010.1.p  96 RQRRERISERMRILQRLVPGG-----TKMDTASMLDEAIHYVTFL 135
                          9******************87.....8**************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.02786135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1487146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.80E-1088140No hitNo description
SuperFamilySSF474592.36E-1490145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-1292141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-596135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDASMELLIM MQGDARLHRH IQNSAFDHHI PAPTKKFQNP IPEMPEYDKY NRMSAMREMI  60
FGIAALQPVQ IDPEAVKPPR RKNVRISKDP QSVTARQRRE RISERMRILQ RLVPGGTKMD  120
TASMLDEAIH YVTFLKKQVQ RLETAVAGRV PPEMLEGQMM MGLGCV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195100RQRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340184.22e-52transcription factor HEC2
SwissprotQ9SND48e-42HEC2_ARATH; Transcription factor HEC2
TrEMBLM5VUU42e-50M5VUU4_PRUPE; Uncharacterized protein
STRINGXP_008340184.17e-52(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]