PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0149s0027.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 676aa    MW: 73364 Da    PI: 6.8793
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0149s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000227496123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cgk F++   L  H+r+H
  Kalax.0149s0027.1.p 74 HVCTLCGKGFRSGKALGGHMRVH 96
                         79*******************99 PP
2zf-C2H211.50.00095148166321
                          ETTTTEEESSHHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                          Cp+C + F+++  L  H+r
  Kalax.0149s0027.1.p 148 CPICRRDFPSNKALFGHMR 166
                          ******************8 PP
3zf-C2H212.50.00044462484123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C+k+Fs++  L  H ++H
  Kalax.0149s0027.1.p 462 YKCTTCNKTFSSHQALGGHKSSH 484
                          9***************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-47397IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.21974101IPR007087Zinc finger, C2H2
PfamPF139124.9E-87496IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-87496No hitNo description
SMARTSM003550.00637496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-8141168No hitNo description
SMARTSM003550.089146168IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-6147170IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
SuperFamilySSF576678.25E-7461484No hitNo description
PfamPF139123.5E-9461485IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.323462489IPR007087Zinc finger, C2H2
SMARTSM003550.015462484IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280464484IPR007087Zinc finger, C2H2
SuperFamilySSF576678.25E-7532559No hitNo description
PfamPF139129.8E-8537561IPR007087Zinc finger, C2H2
SMARTSM003553.1537559IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280539559IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MSKDREDRLS RPLPDSEKKT VSMSDREPES GKSRSSATSG GGKLKIKIKL PERRSCESDR  60
IRDQDAVKEE EEEHVCTLCG KGFRSGKALG GHMRVHAKRD RSDQLKTTHH GIDPAAAAVY  120
SSDMYDEEEV KGSCDDELQI KGGRKPICPI CRRDFPSNKA LFGHMRCHPE RTWRGIQPPV  180
YSSSSTVSDD KSDNDGGGDH HFEKGVVDLE KDLLNFGWGA KDRRDREGTV KSIAPSQTGC  240
QIVFGNTSVQ SIAPEQAVGV QSLILLSRGG VDKKRREIKS RPLPAGPGIR DSVNFTRKLK  300
LCGAGAVAAE SRGRADHDSE RGKKRKTSQV LAAEEVSILT DSSVKRFKFA NEKDDEGSAA  360
RVQDLIMESD PLHQLTARRP MVSAADGGAD FISSLDQKDD ATPHGYNAAD LTETKKMQKV  420
RKYLMITDLK PMTGNLPHSS PVNPARRQVV NMEVPVPDNE RYKCTTCNKT FSSHQALGGH  480
KSSHNKLRNP QSLIRNHELP HSDNVTAQVG ESSNAEAGAS HNSRIIMAAA THDHAIHQCN  540
VCFKIYPTGQ ALGGHKRLHC SLIINKAPPL PPSNMVISEP AEAAPLPPPP SIIIPEPAEE  600
AAHSPPAAPV AQTSDDVRGA LCRFDLNELP ALEDEDEDDE DVIIQPADNT AAGQPQEEVG  660
DDHAAAHHGP GSPPA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.12e-17zinc-finger protein 1