PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0149s0054.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 99aa    MW: 11370.2 Da    PI: 9.7849
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0149s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.61.4e-121464151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+ien + r   +s+Rrn ++KKA+ L   C++e a++++s++g++  +ss
  Kalax.0149s0054.1.p 14 KKIENPTSRLRAYSRRRNNLIKKANRLIKECGVELAIVVISPSGHMSHFSS 64
                         68**********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-7665IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-9828IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-191286IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.7921266IPR002100Transcription factor, MADS-box
PfamPF003194.1E-141562IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-92843IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-94364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MEEIKKMENM EEIKKIENPT SRLRAYSRRR NNLIKKANRL IKECGVELAI VVISPSGHMS  60
HFSSDHNMGS ILERYIDLPL EARYAHDPKL KVLSSYVT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.21e-12AGAMOUS-like 16