PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0150s0038.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 431aa MW: 46862.5 Da PI: 6.5123

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0150s0038.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.4	2.4e-08	384	405	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ff t Ck+G++C+F H+ Kalax.0150s0038.1.p 384 PCMFFNTTRGCKHGANCSFQHD 405 8********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.371	379	407	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	383	406	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.0E-6	383	405	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-5	384	411	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MRGSKTRRVS WAADANLCQV RLFLNDEAPS QVGLGIQDHL QAKTSLHLHV TASEDNLPPG 60 FEGVQPTNLL NNSVLEVPTV RWKRPPKLTV DLTWLVAAGE ESQEIEAENR RGLRVLEAIY 120 PRPSSIPPNA VISVDVMESQ NDHQPPPLIP ITPIEEEGNV DDSPYEYDPM PAKQIGSQGQ 180 VAVSGGFSTP VYVGNNSGST SSSDRLASVA ALGVEPGLLA AASAACTAIM KTDEQGNPID 240 SELLVQILSD HNLVQKLVNG YGANNLQSPP QNFPPVNLAN PPSVQNSQPE LSKPAVPLSS 300 SNGPFYSQPN KMLYSTVQAP PSLPTPPSKD LNYYKSLIKQ HGEGRQEVAQ QFGPRPNSQY 360 GMNQDHQRNN PHYRDSSKPK ILKPCMFFNT TRGCKHGANC SFQHDTSYQQ RASSIPDAKR 420 MKMDREIPGV *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MRGSKTRRVS WAADANLCQV RLFLNDEAPS QVGLGIQDHL QAKTSLHLHV TASEDNLPPG  60
FEGVQPTNLL NNSVLEVPTV RWKRPPKLTV DLTWLVAAGE ESQEIEAENR RGLRVLEAIY  120
PRPSSIPPNA VISVDVMESQ NDHQPPPLIP ITPIEEEGNV DDSPYEYDPM PAKQIGSQGQ  180
VAVSGGFSTP VYVGNNSGST SSSDRLASVA ALGVEPGLLA AASAACTAIM KTDEQGNPID  240
SELLVQILSD HNLVQKLVNG YGANNLQSPP QNFPPVNLAN PPSVQNSQPE LSKPAVPLSS  300
SNGPFYSQPN KMLYSTVQAP PSLPTPPSKD LNYYKSLIKQ HGEGRQEVAQ QFGPRPNSQY  360
GMNQDHQRNN PHYRDSSKPK ILKPCMFFNT TRGCKHGANC SFQHDTSYQQ RASSIPDAKR  420
MKMDREIPGV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435141.1	1e-125	zinc finger CCCH domain-containing protein 6
TrEMBL	V4TFC9	1e-124	V4TFC9_9ROSI; Uncharacterized protein
STRING	XP_006473619.1	1e-124	(Citrus sinensis)

Link Out ? help Back to Top
Phytozome	Kalax.0150s0038.1.p