PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0151s0055.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 260aa    MW: 28002.4 Da    PI: 6.2832
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0151s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087148170123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +Cg  F +   L  H+r+H
  Kalax.0151s0055.1.p 148 HECAICGAEFASGQALGGHMRRH 170
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.0E-1281106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-781104No hitNo description
SMARTSM003550.1982104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.57582109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-7143170No hitNo description
PfamPF139121.2E-11147171IPR007087Zinc finger, C2H2
SMARTSM003550.093148170IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473148175IPR007087Zinc finger, C2H2
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MADGRPNVVV TPTTTFSSLS SEDQMPLATE EEEEEDREVA KCLILLAQAH NPPRIGGLEM  60
MSSRKWWSLE DKKQVNRGGG VYECKTCNRS FHSFQALGGH RTSHKKPRIT THDETPLVSK  120
SPHMGVNVPV PTIAALQLGS RAAKTRVHEC AICGAEFASG QALGGHMRRH RVTNSPLETS  180
TTETKAAAAD GARITISLLA PPAPEEASSR SDHNELLSLD LNLPAASSSE EDETRSFLPE  240
KLQDSGLGLS TPALVDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-40C2H2 family protein