PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0152s0034.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 177aa    MW: 19921 Da    PI: 6.9227
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0152s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.33.4e-4195170277
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          Cqve+C+ad+s+ak+yhrrhkvCe+h+k + ++v+gl+qrfCqqCsrfh +sefDe+krsCrrrLa+hn+rrr+++
  Kalax.0152s0034.1.p  95 CQVENCTADMSDAKQYHRRHKVCEFHAKVQIAVVAGLQQRFCQQCSRFHLVSEFDESKRSCRRRLAGHNQRRRRNT 170
                          *************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.9E-3391156IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.82192169IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-3794170IPR004333Transcription factor, SBP-box
PfamPF031101.3E-3095168IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDRRRDEGVR RSFKEEPVLG EDEEVVEGGN EDAEDEDYDV ESLLDMRPGE CAYGKGSVSG  60
PTGHDTVRSS SSSTGWTPVP QHQLPPRNPQ PLSLCQVENC TADMSDAKQY HRRHKVCEFH  120
AKVQIAVVAG LQQRFCQQCS RFHLVSEFDE SKRSCRRRLA GHNQRRRRNT HACPAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3592168884squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057392.13e-42PREDICTED: squamosa promoter-binding-like protein 3
TrEMBLA0A059C8J56e-41A0A059C8J5_EUCGR; Squamosa promoter-binding-like protein
STRINGXP_010057392.11e-41(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.13e-40squamosa promoter binding protein-like 3