PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0154s0058.10.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 186aa MW: 20431.2 Da PI: 8.9683

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0154s0058.10.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	228	2.4e-70	4	173	6	169
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 se+vCyv+CnfCnt+l+vsvP ts++++vtvrCGhC++llsvn+ q ++ +h+ ++ +++ +e +++++ + ++ s+s+ Kalax.0154s0058.10.p 4 GSERVCYVHCNFCNTVLVVSVPCTSMLNIVTVRCGHCANLLSVNMGALLQP-SSIQHFPQQKQQQTGAEGALMTNATNNLNYSSGSSSS 91 589**************************************99877654.4455556666555555544444444444444444444 PP YABBY 95 svssekl........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s +s+ ++e+++ pr pp +rP ekrqrvPsaynrfikeeiqrikasnP+ishreafsaaaknWahfP+ihfg Kalax.0154s0058.10.p 92 SSPSKCNpdklsgscLSSENNQPPRLPP-VRPMEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFG 173 4444332344466654566677788888.9**************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.1E-71	5	174	IPR006780	YABBY protein
CDD	cd01390	1.28E-5	119	164	No hit	No description
SuperFamily	SSF47095	1.44E-7	120	168	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.3E-5	127	182	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MEVGSERVCY VHCNFCNTVL VVSVPCTSML NIVTVRCGHC ANLLSVNMGA LLQPSSIQHF 60 PQQKQQQTGA EGALMTNATN NLNYSSGSSS SSSPSKCNPD KLSGSCLSSE NNQPPRLPPV 120 RPMEKRQRVP SAYNRFIKEE IQRIKASNPE ISHREAFSAA AKNWAHFPHI HFGMKKAKFL 180 DQDIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022756051.1	2e-73	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	5e-63	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	D7T1M7	5e-71	D7T1M7_VITVI; Uncharacterized protein
STRING	VIT_06s0009g00880.t01	8e-72	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-64	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.0154s0058.10.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]