PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0155s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 667aa    MW: 74292.4 Da    PI: 7.3261
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0155s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-17116211183
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..........EEETTEEEE-TTHHHHHHHHT--T CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliy........rkksgryvltkGWkeFvkangLke 76 
                          f k+lt+sd++ +g +++pk+faee       +++++  ++lt +d +g+ W++++i+         ++++r++lt GW  F + +++ +
  Kalax.0155s0001.1.p 116 FSKILTSSDTSPQGGFTVPKRFAEEAlpsldmSQQPPI-QDLTATDIHGKAWTFRHIFrdffamqmAGNPKRHLLTCGWHPFLNNKQVAA 204
                          889***************************97545555.49***************999*******9*********************** PP

                          T-EEEEE CS
                   B3  77 gDfvvFk 83 
                          gD+++F 
  Kalax.0155s0001.1.p 205 GDMCIFV 211
                          ******8 PP
2Auxin_resp82.31.1e-27269350283
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           +a+  +++F v+Y+P++ + +F+++++k++k++k+++svG Rf  ++e+e+s+++r +G v+++ dld +rWp+S+W+ Lk
  Kalax.0155s0001.1.p 269 FNALLYGTIFVVYYHPWTRSCDFIIPYAKYVKSVKMQCSVGARFTTSLEGEESERKRSTGRVIAIDDLDCLRWPGSEWKRLK 350
                          56777889***********************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-29107253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-23111217IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-15114243No hitNo description
PfamPF023622.1E-14116211IPR003340B3 DNA binding domain
PROSITE profilePS5086310.969116226IPR003340B3 DNA binding domain
PfamPF065075.7E-24269350IPR010525Auxin response factor
PROSITE profilePS5174523.018589666IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.8E-4591665No hitNo description
SuperFamilySSF542776.87E-8592665No hitNo description
PfamPF023091.2E-5628665IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MDGRRHELDE ALWHGCAGHD IYIPQVGDLV AYFPQGHLEQ VKACTNHDDD LDTSSLFKLP  60
SKIFCSVIDV QLKAESKTDE VFARITLHPV AKQEMTEWEE MNDECRSAAI RNVKIFSKIL  120
TSSDTSPQGG FTVPKRFAEE ALPSLDMSQQ PPIQDLTATD IHGKAWTFRH IFRDFFAMQM  180
AGNPKRHLLT CGWHPFLNNK QVAAGDMCIF VSSVKPAIGI TITQLNPSSH RGSNGELRIG  240
IRRALRKENS TTSVISGHDM QLGALASAFN ALLYGTIFVV YYHPWTRSCD FIIPYAKYVK  300
SVKMQCSVGA RFTTSLEGEE SERKRSTGRV IAIDDLDCLR WPGSEWKRLK VEWEAGLSEK  360
LVRPGRISLW SIESLEPDRR GCVLLPPSKK LSRPGLLPTH VKDGNGITIQ GSSSSFQGRG  420
NKGTGAPVPS CSWPLSDPFP AYECAMQMDK FNPQEYYSGA STYPLELQVA SSPLLSLWPS  480
ASGAGGESSN MGDVNGRVLS HDPDEANGLV AKQKELDKHM VFGFNLASTL PEFPSPRPTT  540
ASHELHRRRR RSTPMTSPST CDAKHVSEPR LTEANNHCMK LGCCLTLHDT HAKVRKHGCK  600
VSISIDLTRF NSYREVIFEL DQMFKFEGKL IDGSREWQVT YIDHEGDLML LGGDYPWQLS  660
TETARS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-911237523355Auxin response factor 1
4ldw_A2e-911237523355Auxin response factor 1
4ldw_B2e-911237523355Auxin response factor 1
4ldx_A2e-911237523355Auxin response factor 1
4ldx_B2e-911237523355Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-101auxin response factor 2