PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0156s0056.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19371.1 Da    PI: 7.4166
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0156s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.12.6e-192370249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +ie  s rqvtfskRr+g++ KA+EL vLC+ae a+i +s   k+y +
  Kalax.0156s0056.1.p 23 KIEYPSARQVTFSKRREGLFRKASELAVLCGAEFAIIAISGGSKVYSF 70
                         6888999**************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.881474IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-231473IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-241588IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-181636IPR002100Transcription factor, MADS-box
PfamPF003198.2E-212370IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-183651IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-185172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MMRSNEQVTR KRTRGRRKIP IEKIEYPSAR QVTFSKRREG LFRKASELAV LCGAEFAIIA  60
ISGGSKVYSF GNPDAGTVIN HYLNKRKVMR DNHSIVDEEA IGSYVRVVEE LEAEKRKLAA  120
ERGGGGKGFE EWKEEEKIEE MSLEEMEEYL KWLECLRTEI VEKIGEPSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-23AGAMOUS-like 62