PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0156s0074.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 250aa    MW: 28171.2 Da    PI: 6.0975
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0156s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.2e-112361248
                         HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Kalax.0156s0074.1.p  2 IIHLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 36
                         5788899****.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0017138IPR001005SANT/Myb domain
PROSITE profilePS5129419.876140IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-15137IPR009057Homeodomain-like
CDDcd001672.26E-7136No hitNo description
PfamPF002491.3E-9236IPR001005SANT/Myb domain
SuperFamilySSF466891.48E-9246IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MIIHLQALLG NKWAAIASYL PERTDNDIKN YWNTHLKKKL DNRYQQTMEQ PHHHYLINSS  60
QQLHHPSNNM GAASSSTSSS NNGVITCVHN NYSPSPLLHA TTNSSSLTSS SYYASSTENI  120
SRLLEGWMRT SPKTNNKQLI IRSRSEHESS SEDLIVVGME EDEAVVVPNK DDTAGHEMTM  180
WAKGRSECFD KEMMMMMMKQ QDEEGGNDSS HGHQHHNNPP FSIFEKWLFE ETSNSGGGQV  240
EEMQLSPIF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-28myb domain protein 60