PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0157s0059.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 265aa MW: 30396.9 Da PI: 9.0082

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0157s0059.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	98	121	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF +L +H + H Kalax.0157s0059.1.p 98 WRCGYCKKSFYAEKYLDQHFDNrH 121 58*****************76666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	100	121	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAMTKVVATI LVLLSISSQS SVTVSSASIL NHGFKEDRHE VHCSRERSRA AWKIIEDYLM 60 PFVEQEKYQL STKCRLHSDN DVYRDQEQHK IHFDINEWRC GYCKKSFYAE KYLDQHFDNR 120 HYNLLNASES RCLADLCGAL HCDQVLNSKA TKSKCNPAAA ARNHHLCEGL ADSCFPANEG 180 PSASRLHELF LRQFCDAHTC SGKYKPFPRG GKKQSGVFYL SISILTLMLL PIFYLMVFLY 240 QREMRNGTQE LKRITKFGRK KKPS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021808464.1	1e-141	uncharacterized protein LOC110752165
TrEMBL	A0A2N9FJD7	1e-142	A0A2N9FJD7_FAGSY; Uncharacterized protein
STRING	XP_008239409.1	1e-139	(Prunus mume)
STRING	XP_006440031.1	1e-139	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-122	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Kalax.0157s0059.1.p