PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0160s0038.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 140aa MW: 15601.6 Da PI: 6.6737

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0160s0038.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	83	109	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 hn+ E+rRR+riN+++ L++l+P++ Kalax.0160s0038.2.p 83 VHNMSEKRRRSRINEKMKALQDLIPNS 109 6************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.11E-9	76	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-9	76	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.846	79	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.11E-8	82	111	No hit	No description
Pfam	PF00010	5.7E-7	83	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MFDHAAAPSP AFSDSDEISA LLRQILHRSS NQCNRQLQTP TELPIDDLEE HDGPSEVGEG 60 LEALVEEATK RRRSSKRRRA AEVHNMSEKR RRSRINEKMK ALQDLIPNSN KVISPSLQPE 120 ALTHCLFLGL ISEAVSVCF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	91	RRRAAEVHNMSEKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021273866.1	6e-23	transcription factor SPATULA isoform X4
TrEMBL	A0A438F5T8	4e-22	A0A438F5T8_VITVI; Transcription factor SPATULA
STRING	VIT_07s0031g00450.t01	2e-21	(Vitis vinifera)
STRING	EMJ05761	1e-21	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	1e-13	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0160s0038.2.p