PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0160s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 192aa    MW: 21693.4 Da    PI: 9.7051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0160s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09105145954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Kalax.0160s0043.1.p 105 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 145
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.43496145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1497154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14100154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-14102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6106145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-5119150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDASMELMMT MMQTDTGRRH HTADFVVHPQ PPPPPHHFPL SELHNPGYAA LPQMSELERQ  60
SSMAAMREMI FRIAAMQPVQ IDPEAVKPPK RKNVRISKDP QSVAARHRRE RISERIRILQ  120
RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLERAGVAAA GFEEFPVRVM EGQMMMMGMG  180
IGCVQQQQMM C*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343167.14e-60PREDICTED: transcription factor HEC2-like
SwissprotQ9SND41e-48HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2N9E7784e-58A0A2N9E778_FAGSY; Uncharacterized protein
STRINGXP_009343167.12e-59(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]