PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0161s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 303aa    MW: 34318 Da    PI: 6.4252
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0161s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-203584255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Kalax.0161s0009.1.p 35 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 84
                         69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.13E-323494No hitNo description
PROSITE profilePS5103222.553592IPR001471AP2/ERF domain
SMARTSM003802.1E-363598IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-213593IPR016177DNA-binding domain
PfamPF008472.8E-133584IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-303593IPR001471AP2/ERF domain
PRINTSPR003672.5E-103647IPR001471AP2/ERF domain
PRINTSPR003672.5E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDNCGSNSRK TSISNKPWRK GPTRGKGGPL NSSCEYRGVR QRTWGKWVAE IREPKKRTRL  60
WLGSFATAEE AAMAYDEAAR RLYGPEAYLN LPHLQMQPTN DPNSTTAFPS KSHNRFRWFP  120
SKNFISMFPS CGLLNLNAQP SVHLIHQRLE ELKKNNSTKP ANNYSSSVSK TEELHTKSSI  180
QTHEDGDTMS ASRDGQQLLP SASLSDNQPH KQEQKPQIDL HEFLQQLGIL KDEEINQQEQ  240
YMEGMSSYTN ENLELLVQND SLADGKSFNW ESLIEYQSAG ENSDACFQFS DTHEDILFPN  300
TI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-183692360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028832.21e-99PREDICTED: dehydration-responsive element-binding protein 2F
SwissprotQ9SVX53e-76DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A061F4761e-98A0A061F476_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY093342e-99(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-66ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]