PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0162s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARR-B
Protein Properties Length: 603aa    MW: 65929 Da    PI: 6.6945
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0162s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.33.6e-28201254155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Kalax.0162s0015.1.p 201 KPRVVWSIELHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 254
                          79*******************.********************************8 PP
2Response_reg71.63.2e-24201261107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+p+ + ll+ +l+k +y +v++ +++ +al+ll++ +  +Dl++ D+ mp+mdG++ll++   e   lp+i+++a+g+++++ +
  Kalax.0162s0015.1.p  20 VLAVDDDPTCLLLLEGLLRKCKY-HVTTRTHAIAALNLLRDDNnrFDLVISDVHMPDMDGFKLLEQVGLEM-GLPVIMLSAYGDPKLVMK 107
                          799********************.***************777667**********************6644.8***************** PP

                          HHHTTESEEEESS--HHHH CS
         Response_reg  89 alkaGakdflsKpfdpeel 107
                           +  Ga d+l Kp+ +eel
  Kalax.0162s0015.1.p 108 GITHGACDYLLKPVRIEEL 126
                          *****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.42E-3517142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-4017181No hitNo description
SMARTSM004481.1E-2918130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.59119134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2120127IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.38E-2221134No hitNo description
Gene3DG3DSA:1.10.10.601.5E-29198259IPR009057Homeodomain-like
PROSITE profilePS5129411.118198257IPR017930Myb domain
SuperFamilySSF466892.69E-19199258IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-25201254IPR006447Myb domain, plants
PfamPF002498.8E-6203253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MTIEQRIEEP ADQFPVGMRV LAVDDDPTCL LLLEGLLRKC KYHVTTRTHA IAALNLLRDD  60
NNRFDLVISD VHMPDMDGFK LLEQVGLEMG LPVIMLSAYG DPKLVMKGIT HGACDYLLKP  120
VRIEELQIIW QHVIRKKRVD PKDHKSADNT HYGNTEAGQA GAGNGYPDHK SNKKRKDQVE  180
DEDEDHDDNE LENDDPSAQK KPRVVWSIEL HRKFVAAVNH LGIDKAVPKR ILELMNVEKL  240
TRENVASHLQ KYRLYLRRIS CVQSQQANMA AAFGTTDPAS YLRVNGMGGF NSLSGSPQFQ  300
NSAAFRSFQP NGMLGRLNSP ASLGGIQRLP SQFSGFSEQG VTLIPGNSTG CILKGMPMPM  360
PMPTSFELDQ LQDSNNRNAT AKVDDLAVFP VTSGLPDVKK TAAGGLSGPH LPPPTSTLML  420
EGHPVQSHSR VGIGNQSAAV FGSLTPDLSS HFSDRARDSD NWPVAIQSST GHSHSYASYS  480
GPQHVNSHLD DGASVTELPL SVTDYQYGSH SDIKPTWDSF ATAAAPIYSS SHSTTTAAYT  540
NLRRVTNARS EFHAIEANYT VENSATSAPS ANFKRGYPNK PQTYQLPNSV GSLEDLVSSM  600
MK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-26197260164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883435.11e-179two-component response regulator ARR12-like
TrEMBLA0A438KF931e-170A0A438KF93_VITVI; Two-component response regulator
STRINGVIT_04s0008g05900.t011e-171(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-125response regulator 12