PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0163s0039.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 347aa MW: 37519.8 Da PI: 8.3459

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0163s0039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00082	36	59	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ s + H H Kalax.0163s0039.1.p 36 FKCHVCHKKLSTASGMAIHVLQvH 59 89***************9987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50808	11.727	7	66	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	4.76E-5	11	61	No hit	No description
SMART	SM00355	7.7	12	35	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.328	12	35	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	14	35	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.1	36	59	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	38	59	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MGKKKKRAST KYWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MAIHVLQVHK 60 ETVSTVPNAK PGRESTEIDI YGMQGIPPDV LAAHYGEEEE ETPSKLTKYD PSSQLHGAMT 120 SGSFSLSHPP QSAAVPPHPL YNPAMPRTPI GWPLPPRPQP WLQPHSSGHL LGPMGAIHRP 180 LFPVHNVQPP PAAIPAMQSP LPTVPPAPPS FASISVSQPL FPVGSSTNLP SQSSPMLSAS 240 IPLSSPMGSF NGTGGTVMNM HSYASGPNTG GPSIGPPPVI ANKAPAVNSS ANEVYLVWDD 300 EAMSMEERRM SLPKYQVHDE SSQMSSVDAA IDRRILESRL AHRMAF*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MGKKKKRAST KYWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MAIHVLQVHK  60
ETVSTVPNAK PGRESTEIDI YGMQGIPPDV LAAHYGEEEE ETPSKLTKYD PSSQLHGAMT  120
SGSFSLSHPP QSAAVPPHPL YNPAMPRTPI GWPLPPRPQP WLQPHSSGHL LGPMGAIHRP  180
LFPVHNVQPP PAAIPAMQSP LPTVPPAPPS FASISVSQPL FPVGSSTNLP SQSSPMLSAS  240
IPLSSPMGSF NGTGGTVMNM HSYASGPNTG GPSIGPPPVI ANKAPAVNSS ANEVYLVWDD  300
EAMSMEERRM SLPKYQVHDE SSQMSSVDAA IDRRILESRL AHRMAF*

Functional Description ? help Back to Top
Source	Description
UniProt	Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694, ECO:0000269\|PubMed:19121105, ECO:0000269\|PubMed:21282526}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016734728.1	1e-162	PREDICTED: protein SUPPRESSOR OF FRI 4-like
Swissprot	Q9C5G0	1e-130	SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBL	A0A1U8NA11	1e-161	A0A1U8NA11_GOSHI; protein SUPPRESSOR OF FRI 4-like
STRING	XP_009363258.1	1e-156	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30970.1	1e-127	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0163s0039.1.p

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645] Resentini F, et al. SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression. Plant Physiol., 2017. 173(1): p. 155-166 [PMID:27920160]