PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0163s0046.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 321aa    MW: 35200.6 Da    PI: 7.3092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0163s0046.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.8e-11174226254
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++ hn+ Er RR ++N +++ L +l+P++sk  +k+ s  ei  +A  YI +L
  Kalax.0163s0046.2.p 174 KQDHNAKERLRRMKLNASYSALSSLIPNNSKRLKKRWSAPEIINRALTYIPEL 226
                          688*************************88888888**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-12166238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-8171231No hitNo description
Gene3DG3DSA:4.10.280.102.9E-10171230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.722172226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-8174226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-4178232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDFDASQPQF LRDDFLLGPL AIVTTSDGNA LFTSATRVDV RPVPASLNPY PNASTMPSAH  60
NFGDNTSIFG LQECHDTDTC THTQQVDESP TATQVQKNGN AHTDASEQAN EMVIVMVQNQ  120
GTTNGSRIIR PGVNNKGIRK VSTSSKDKMS MAVQDKLALE ASAEGSLGAH RKTKQDHNAK  180
ERLRRMKLNA SYSALSSLIP NNSKRLKKRW SAPEIINRAL TYIPELKNEI ARMTLEKEKR  240
MSIHETNKKH NNQVTANISL RVFEVDEGNF IIQICVKSAE GDVLSGLLHE VEDEGASIKG  300
ASTVLMSNDR ICCHLQVEVS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.14e-25bHLH family protein