PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0164s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 448aa    MW: 50564.5 Da    PI: 5.0837
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0164s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.78.9e-34141052102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye+++d++ + ++sws++++sf+v+++ ef++++Lpk+Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +++ 
  Kalax.0164s0029.1.p  14 FLAKTYEMVDDPSSNLIVSWSSSNRSFIVWNPPEFSRDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRDQP 94 
                          9***************************************************************9998.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +l+++i+r+k 
  Kalax.0164s0029.1.p  95 HLMKNIRRRKP 105
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.5E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDESLGGSNA LPPFLAKTYE MVDDPSSNLI VSWSSSNRSF IVWNPPEFSR DLLPKFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RDQPHLMKNI RRRKPVHSHS VHNQVHAISS  120
PLTESERNGY KDDIGRLKRE KEALQRELEK KKREREEFEL HAQSLKQQLE CIGQRQEKLA  180
SFLAQVLNKP GLVLSFTPAV TIHNRKRRLM KRDCFQGEAE IDGNPLKTSR VAGTEEAVSA  240
TMSSLSTEQV DQMESSVAHW EEIIYQVGQT CGEDVYNVQT PPLAVILTEI DPPLEGAGIN  300
PEKHFSPMAD SKDNSLTFDL DESRGCADSP ALSFLQLNID VPSKATGIDM NNEPSIQAPE  360
AVQPTDKDSE AVTDVRTTII VPTGANDTFW EQFLTEHPGS SNVHDSQVEK KDSEIKKQSD  420
PSKLWWNIPN VNNLVEQMGH LTPAERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-22510311120Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449558.11e-157heat stress transcription factor A-4a
RefseqXP_024047370.11e-157heat stress transcription factor A-4a
RefseqXP_024047371.11e-157heat stress transcription factor A-4a
RefseqXP_024047372.11e-157heat stress transcription factor A-4a
TrEMBLV4TQJ71e-155V4TQJ7_9ROSI; Uncharacterized protein
STRINGXP_006449558.11e-156(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-100heat shock transcription factor A4A