PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0164s0056.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 738aa    MW: 80295.1 Da    PI: 7.3174
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0164s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.3e-24171272199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++       ++ + s++l+ +d++gr+W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +
  Kalax.0164s0056.1.p 171 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyTLQRP-SQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNRKKLVSGDAVLFLR 259
                          99****************************9955544.569************************************************4 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                              ++ l+++v+r+
  Kalax.0164s0056.1.p 260 G--GDGILRLGVRRA 272
                          3..677778888875 PP
2Auxin_resp104.21.6e-34297378182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +++a+st+svF++ YnPr ++s+F+++ +k+ ++l +k+s GmR+km  eted++err++G v+gvsdldp+ Wp+SkW++L
  Kalax.0164s0056.1.p 297 VINAISTRSVFDISYNPRGTSSDFIIPHSKFTRSLVHKFSCGMRLKMCCETEDAAERRFTGAVTGVSDLDPIGWPGSKWKCL 378
                          5799*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-40167280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-39167274IPR015300DNA-binding pseudobarrel domain
CDDcd100178.95E-23169271No hitNo description
PROSITE profilePS5086313.563171273IPR003340B3 DNA binding domain
PfamPF023629.9E-22171272IPR003340B3 DNA binding domain
SMARTSM010191.0E-23171273IPR003340B3 DNA binding domain
PfamPF065075.1E-29298378IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MICAVEGLSE ILAMAATGRG LNLFDLNTAE EEDAAAGGSL SPSPSPTSTC SGVVPGSTGC  60
VAPSVCLELW HACVGPLVSL PKKNSLVVYF PQGQLECFGE SPAVICGVPP HVFCRVLDVK  120
LHAEVDSDEV CAQVFLIPVA QEQLPQVDKT EVDGEDDDIN CGSKSMARHM FCKTLTASDT  180
STHGGFSVPR RAAEDCFPPL DYTLQRPSQE LVAKDLHGRE WKFRHIYRGQ PRRHLLTTGW  240
SAFVNRKKLV SGDAVLFLRG GDGILRLGVR RAAQLKEKPP FPPIFREQQS HGSFSAVINA  300
ISTRSVFDIS YNPRGTSSDF IIPHSKFTRS LVHKFSCGMR LKMCCETEDA AERRFTGAVT  360
GVSDLDPIGW PGSKWKCLLV EWDDSENNLH GGRVSPWEVE PAGFVVGCCM PAPSGSKRGR  420
NGLPSTIHNL PIPDGKGLPD FRESLRFQKV LQGQEIMSLK PQNTQNHNLA ESLSCYPGTD  480
SSRIGASGNK ISRPYFGNPD FSFNNKGFGE SQWFQRVLQG QEKTSNMPYG MISCTSSHDE  540
LLGIFNGIAL PNFRRTALLH DSNSQFHAAK SSVPVSSPSS VLMFPQATSL VPNPCRVPGL  600
LEGRGIGNQG QVSPTRPYVG ELPSSYIKDN FVMFESCIPR TQFNQQDFCG HGPRPALSGS  660
QKLDPSCKNS CRLFGISLTD KEHAPNVADE TILKANQLNT GPAFCITERQ FLAQHPTMAL  720
GRLQKFDSAS DAITYGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1015940113354Auxin response factor 1
4ldw_A1e-1015940113354Auxin response factor 1
4ldw_B1e-1015940113354Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655464.10.0PREDICTED: auxin response factor 3
RefseqXP_019078171.10.0PREDICTED: auxin response factor 3
TrEMBLA0A2N9G8C10.0A0A2N9G8C1_FAGSY; Auxin response factor
STRINGVIT_10s0003g00420.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-173ARF family protein