PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0165s0045.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 225aa    MW: 24459.2 Da    PI: 5.151
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0165s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.72.9e-3691091100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++Cv+apyf  ++ + +f +vhk+FGasnv+kll ++p ++r++a+ ++ yeA  r+ dPv G+v++i +l+qq+++
  Kalax.0165s0045.1.p   9 SCGACKFLRRKCTSECVFAPYFSYDEaATHFGAVHKVFGASNVSKLLMHIPVQHRTEAALTISYEAFSRMTDPVFGCVAHIYALHQQIAN 98 
                          6**********************988689************************************************************* PP

               DUF260  90 lkaelallkee 100
                          l++e++l++++
  Kalax.0165s0045.1.p  99 LQEEIELVGSQ 109
                          ******99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5938110IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-349106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAGQGSSSSC GACKFLRRKC TSECVFAPYF SYDEAATHFG AVHKVFGASN VSKLLMHIPV  60
QHRTEAALTI SYEAFSRMTD PVFGCVAHIY ALHQQIANLQ EEIELVGSQM AAGFPFTFPV  120
SQPTTDKVSM NPAAFNLQQQ MDHHQQAQYI TNAGYGNGAA DQSYIYQCQQ LPFVWGSGEA  180
HSGNNDNYLN GEINEGLDHE PALLCSPLLN NNDNVTEIPN TAASG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3151207128LOB family transfactor Ramosa2.1
5ly0_B2e-3151207128LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091407.11e-61LOB domain-containing protein 33
TrEMBLA0A067LJS23e-60A0A067LJS2_JATCU; Uncharacterized protein
STRINGXP_004490916.11e-58(Cicer arietinum)
STRINGcassava4.1_027792m2e-58(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.18e-55LOB domain-containing protein 33