PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0167s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 310aa    MW: 34373.4 Da    PI: 6.9905
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0167s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001111133123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C ksFs++  L  H++ H
  Kalax.0167s0006.1.p 111 FTCTFCMKSFSTSQALGGHQNAH 133
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.19E-7107139No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6109139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.341111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEQPPPPFLH SSLTCNFNPK PPPEIINVED QDDGSLELGR WLLNIPHGDG NRHGNLNNNG  60
QNVPNNFGFH HQPAIVIDNN EEGIKLGRST GTTRGVNGSH HIPSPWSDKL FTCTFCMKSF  120
STSQALGGHQ NAHKQEHPFL ESYSQGLRSG GHVPNYSYPS QTNAWNYRPS SNAMMTLAQL  180
PASHARQVGS NSLTPAGAFG MPERPPPLYP NNHGLVDSSR FNLGFNNNSY TRHPLREVGQ  240
MNRGLPMNSV LLTHTHIRSS NAVETITTML IWGCRELCLV EEDTMKLVIM RDLPHNYTTN  300
EDLDLTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.14e-11C2H2 family protein