PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0168s0017.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 203aa MW: 23247.4 Da PI: 9.8687

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0168s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.4	8.2e-51	14	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 + pGfrFhPtdeelv +yL++kve+k+l++ e ik++d+yk++PwdLp ++v ++++ewyfF+ r +ky+++ r+nr+t sg+Wkatg d Kalax.0168s0017.1.p 14 MLPGFRFHPTDEELVAFYLRRKVENKQLSI-ELIKQIDLYKYNPWDLPtASVGTNDQEWYFFCLRGRKYKNSVRPNRVTGSGFWKATGID 102 579*************************.89***********778999999***************************** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++s +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl Kalax.0168s0017.1.p 103 KPIYSFkqPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 143 96444556*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-53	13	151	IPR003441	NAC domain
PROSITE profile	PS51005	49.736	14	165	IPR003441	NAC domain
Pfam	PF02365	1.0E-25	16	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MSTSDKKQDE DEVMLPGFRF HPTDEELVAF YLRRKVENKQ LSIELIKQID LYKYNPWDLP 60 TASVGTNDQE WYFFCLRGRK YKNSVRPNRV TGSGFWKATG IDKPIYSFKQ PHECIGLKKS 120 LVYYRGSAGK GTKTDWMMHE FRLPPQRKNS AGQQQNSSLA KSSNITLEAV SLLPSFSLYS 180 SSTNTNQFQS PLLHILATVF NM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-47	1	143	1	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022637360.1	1e-88	transcription factor JUNGBRUNNEN 1 isoform X2
Swissprot	Q9SK55	4e-76	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A3Q0EZZ1	3e-87	A0A3Q0EZZ1_VIGRR; transcription factor JUNGBRUNNEN 1 isoform X2
STRING	XP_007141427.1	6e-88	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-78	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Kalax.0168s0017.1.p

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]