PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0168s0063.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 389aa    MW: 43392.9 Da    PI: 7.1607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0168s0063.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18166216256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Kalax.0168s0063.1.p 166 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEDAAMAYDRQAFKLRGE 216
                          59******9.**********966...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.21E-32165224No hitNo description
PROSITE profilePS5103222.879166223IPR001471AP2/ERF domain
SMARTSM003801.2E-38166229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-31166224IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23166224IPR016177DNA-binding domain
PRINTSPR003676.2E-11167178IPR001471AP2/ERF domain
PfamPF008473.0E-12167216IPR001471AP2/ERF domain
PRINTSPR003676.2E-11189205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MATSSDKDLD SNGRPLRKGR SPDRQNPYQI HNNSIMLAQQ TPLHQSSSSS SSSSRLVFPF  60
PLDASQPQFN QQQQQQQQYS SIPYYPPQTQ QHQMISFAAA HQHQRSGGDA AAVTPQQQQH  120
TLQYWSDSLN LSPRGKMLMM MNRLGVQERT SALPRPQLQP IHTTKLYRGV RQRHWGKWVA  180
EIRLPRDRTR LWLGTFDTAE DAAMAYDRQA FKLRGENARL NFPERFLDKE RVISTAPSSP  240
SSAPASSTNP PPASVVPDSK LEDCFKAEER DLSEVLNNAT STETADCASN NNEFVWGDMA  300
EAWFNAIPAG WGPESPVWDN LDATNQLLLH PNNLPPSTFS QHNEQIAELS VACELRRQLS  360
NLGAAGSTSS SSSNSTSFLW NHPHSTQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20165225162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972100.12e-93PREDICTED: ethylene-responsive transcription factor ERF053
RefseqXP_021289672.11e-93ethylene-responsive transcription factor ERF053-like
TrEMBLA0A061E4174e-94A0A061E417_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOX993827e-95(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.19e-59ERF family protein