PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0169s0046.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 1095aa    MW: 122138 Da    PI: 8.3728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0169s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-074580340
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                          W+  E +++++a +++G++ Wk++a+ +   R+ +++
  Kalax.0169s0046.1.p 45 QWSNKELQQFYEAYRKYGTN-WKKVAAAVR-SRSVEMV 80
                         6*****************99.********9.9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00364290IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-94489IPR009057Homeodomain-like
PfamPF002491.2E-64580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-44579IPR009057Homeodomain-like
CDDcd001672.62E-54680No hitNo description
PfamPF065841.9E-32583683IPR033471DIRP domain
SMARTSM011356.9E-59583684IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1095 aa     Download sequence    Send to blast
MAPSRKNGNA NKQSPSANKV VAKKDEEDVK TKLKKRKLGD MLGSQWSNKE LQQFYEAYRK  60
YGTNWKKVAA AVRSRSVEMV EALYSMNRAY LSLPEGTASV AGLVAMVTDH YSVMERSDSE  120
QESNEDREAP QRAQKRSRRK IRSSTFKDVD HNLPDHSPSR FVESSSDCLS LLKANLPGSE  180
PRVVGKRTPR VPVVHSSDRD FGDKYFTAKP GLKFKMDADD HVAHEIALAL TKSSQKDKSP  240
RVSQSNRVSQ RKIRNVLSPA KNDDRMGTSA QLRGSARDEQ DHEGSMGSIG TDVDSLRRGS  300
NLRVREGVGT ADIQRKGKRF HGKKAFAEIG NEYLDDLKEA CSGTEEQNSG ALNKKHGFEI  360
PKQLLPKGLK KRSKKILFDE DESDAFEALN TLADLSLTMP EPYLDNDNRG ADINSSSAKL  420
KGKISLGGDE DITIKFGSER GASVVTIPDA EDKTGLWKRK KKPLPFCMEN SKMEPHLYHT  480
ENLQNNEDVE DVNKSLGKDY HNEGEHARAS TLHVSRDSEG DSSSKIRNRR KRDLPESVNC  540
KDTNSSVQVE SGRPIDGIVN LKAKLAKCLS WRKAQRWCTF EWFYSAIDYP WFARREFVEY  600
LDHVGLGHIP RLTRVEWGVI RSSLGKPRRF SQQFLKEEKE KLNQYRESVR NHYTELRLGA  660
REGLPTDLAR PLSVGQRVIA IHPKTREIHD GSILTVDRSR CHVQFDKPDL GVEFVMDIDC  720
MPLNPLENMP ASLAINKLSE NHCGVKLNGL ASHHSASVQF NPNGNVDNSD GPVLRPLSDN  780
VVGNSTKTMR DEIVAGNVQA KARVGSISEQ QAADQPLFLA QSKEADVKAL YEMTCVLDKK  840
EAIVSELKRM NDEVEENKRR DSSFEVPEPF SKRYASVLVQ LDEVNDQVTF ALRCLRQRNT  900
YQGSFGLITT KPALDDVGVL SCTVNNSTSD TSKQETHVPE IAEGSRSKAQ KMVNAAMQAM  960
SSLKNSAYGG VEEAIDYLNT QLSQEEPSLS AVRPFPVSHA PEEHHSSNAG DPKLNRTPES  1020
NAQIPSELIT NCVATLFMIQ KCTEREFPPA DVAQILDSAV TSLQPCCSQN LPIYAEIQKC  1080
MGIIRSQILA LIRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649755.10.0PREDICTED: protein ALWAYS EARLY 3
TrEMBLA0A2I4F3380.0A0A2I4F338_JUGRE; protein ALWAYS EARLY 3 isoform X1
STRINGcassava4.1_000519m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding