PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0170s0071.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 407aa    MW: 44082.6 Da    PI: 6.6096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0170s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001187209123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  Kalax.0170s0071.1.p 187 YECKTCNRTFPSFQALGGHRASH 209
                          99**********99999998887 PP
2zf-C2H213.20.00026271293123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Kalax.0170s0071.1.p 271 HECSICGAEFSSGQALGGHMRRH 293
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-8186209No hitNo description
PfamPF139127.6E-13186211IPR007087Zinc finger, C2H2
SMARTSM003550.052187209IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159187214IPR007087Zinc finger, C2H2
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-8266293No hitNo description
Gene3DG3DSA:3.30.160.603.3E-4267295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.9E-13270295IPR007087Zinc finger, C2H2
SMARTSM003550.01271293IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616271298IPR007087Zinc finger, C2H2
PROSITE patternPS000280273293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDYAHNNSTK LQQDDNISNN VSLIDYGCGR VDDDDDAVGL INIKATTTSG SVNSSPSGAP  60
RNKEDDEGEE QAQMKNHDNV VTATFQPPTT MITTMMIVKG KRTKRQRLHS PVVLHSYNGN  120
DTAQEEEEDE DEEAAEELDM ANCLILLARG QSPSIRRNEL GLFTKLSSSS KRFSSENKRV  180
HGTSSVYECK TCNRTFPSFQ ALGGHRASHK KLKITANDHF RQSAISDNTH SPPSPLVITP  240
SPSTLSLQLG NINYYSRAPS AHTNKSGHKV HECSICGAEF SSGQALGGHM RRHRGPMITL  300
NSSTTTTTTT NNNNNPIANT TLSLSTVIAV ESPDTAAAKV NRINTSNNNG LLSLDLNLPA  360
SPSPSPSPED HDHTNFSLAP KQPQPQQPQQ QSAVVFSTPA LVDCFY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-32C2H2 family protein