PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0171s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 263aa MW: 28891.7 Da PI: 9.2441

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0171s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.4	6.8e-40	64	163	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C++ pyf ++p+kfa vhk+FGasnv+k+l ++pe +r d+++slv+eA++r+rdPvyG++g i++lqqq+++l Kalax.0171s0008.1.p 64 PCAACKLLRRRCAQECPFFPYFSPHEPQKFASVHKVFGASNVSKMLMEVPEAHRADTANSLVFEANVRLRDPVYGCMGAISALQQQVQSL 153 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +ae++++++e Kalax.0171s0008.1.p 154 QAEINAIRAE 163 ***99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.472	63	164	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-40	64	161	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MSRERDKSSQ FSDELEKKIK RSASLAATET ITSEDNSASD QMIVGRRQML GSPGRRTRLN 60 TITPCAACKL LRRRCAQECP FFPYFSPHEP QKFASVHKVF GASNVSKMLM EVPEAHRADT 120 ANSLVFEANV RLRDPVYGCM GAISALQQQV QSLQAEINAI RAEILNYKLR GEANGIITTN 180 SHSNCYMTSN FIPPSPPWAN ITVASLTPRP PSSSVVAATS ASHLLTTTTS SSLSVYTNQS 240 SIRNVMMGYS NSIVNENFRY LD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	64	178	11	124	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	64	178	11	124	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023925198.1	2e-84	LOB domain-containing protein 15
Swissprot	Q9AT61	2e-67	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2P5AHJ8	5e-84	A0A2P5AHJ8_TREOI; Wilm's tumor protein
STRING	XP_010067591.1	4e-82	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	5e-68	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Kalax.0171s0008.1.p

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]