PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0172s0033.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 171aa MW: 19536.1 Da PI: 8.8098

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0172s0033.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.8	5e-12	8	48	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i+n+s r+ t+ kR + ++KK EL +LC++ ++ +i+s+ Kalax.0172s0033.1.p 8 FIQNHSARKATYKKRSTNLIKKLDELTTLCGVVACCVIYSP 48 79*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-4	1	58	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.311	1	47	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.46E-15	6	88	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-13	8	49	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MARRPVGFIQ NHSARKATYK KRSTNLIKKL DELTTLCGVV ACCVIYSPGS DQPLVWPQSQ 60 EQVRRVLTDY QSQPQAVKTR STSTAVSLLQ QQIARQREKL EKQRKENREK EMTEVMFQGL 120 TGKNLPFMNL YDLNDLAWLI DEYLNKISFH RGEREEGDWD ESAGDDGAKA *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016464483.1	4e-44	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A1S3ZJU3	9e-43	A0A1S3ZJU3_TOBAC; agamous-like MADS-box protein AGL80
STRING	POPTR_0005s00420.1	1e-43	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	5e-35	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Kalax.0172s0033.1.p