PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0173s0047.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 252aa    MW: 28003.1 Da    PI: 9.699
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0173s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding378e-12556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT+eE+e l+ +++++G g Wk I           +Rt  ++k++w+++
  Kalax.0173s0047.1.p  5 KLKWTAEEEEALLSGIARYGAGKWKNILTDPEfapvfSKRTNIDLKDKWRNL 56
                         689****************************9*****88***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.978161IPR017930Myb domain
SuperFamilySSF466892.01E-15259IPR009057Homeodomain-like
SMARTSM007171.4E-6459IPR001005SANT/Myb domain
PfamPF002493.0E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-13557IPR009057Homeodomain-like
CDDcd116606.05E-19757No hitNo description
Gene3DG3DSA:1.10.10.102.9E-14114179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.6E-18115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.098117185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.03E-14118184IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005386.1E-12119178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGNPKLKWTA EEEEALLSGI ARYGAGKWKN ILTDPEFAPV FSKRTNIDLK DKWRNLTVSS  60
TGHHGMKDKT RIPKLKSLMA STSSNAQRNE SLAIVPHEAP LDVVMEDAPN GTHEPKNAPK  120
YNDMIFEAIS AAKDPKGLDI NAIITFIEKK QEVPPNFRRL LSSKLRRLVT QGKLDKVQNC  180
YIIKKDMLPL SLPESKTSPA PAQKETRLQH PRTNGHAMVD TAMEEASISA AYKIADAENK  240
SFLASEAVKE SE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890673.11e-87telomere repeat-binding factor 4
TrEMBLA0A200QD615e-88A0A200QD61_9MAGN; SANT/Myb domain
STRINGEOY271612e-84(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-63MYB_related family protein