PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0174s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 185aa    MW: 19848.1 Da    PI: 9.8522
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0174s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000724062123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cg+ Fs+   L  H  +H
  Kalax.0174s0016.1.p 40 FECKTCGRAFSSFQALGGHSASH 62
                         89*********998887777764 PP
2zf-C2H211.80.0007591113123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg+ F     L  H+r+H
  Kalax.0174s0016.1.p  91 HECSICGMKFGLGQALGGHMRRH 113
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.25E-839113No hitNo description
SMARTSM003550.394062IPR015880Zinc finger, C2H2-like
PfamPF139127.2E-114065IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.9464068IPR007087Zinc finger, C2H2
PROSITE patternPS0002804263IPR007087Zinc finger, C2H2
PfamPF139126.2E-990114IPR007087Zinc finger, C2H2
SMARTSM003550.1291113IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.32891118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MMKRGREDES SMLEADAAEC LVQISCASRN SAGSSGRVMF ECKTCGRAFS SFQALGGHSA  60
SHHKKPKPSP GEATAAMASE AVRVKAEPTV HECSICGMKF GLGQALGGHM RRHRIELKGG  120
GGVGDRPRGI VSDQDAKLLV PVLRRSLSKN KRVIMCMDLN LTPLENDLEL LFGKMAPKVD  180
RRLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047364.11e-48PREDICTED: zinc finger protein ZAT11
TrEMBLM9Z1Z03e-47M9Z1Z0_EUCGR; C2H2-type zinc finger protein 6
STRINGXP_010047364.16e-48(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-38C2H2 family protein