PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0174s0036.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 293aa MW: 32998.7 Da PI: 8.867

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0174s0036.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.8	8.6e-18	20	107	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv ++s+ l +p f++ + g+ + +l+d +gr W+v l ++ +++ ++++GW++Fv + L+eg+f++F++d+ ++f Kalax.0174s0036.1.p 20 FFKVY--LACFSSHHLKIPPAFVKYCVGN--LPERAVLKDVNGRAWDVGL--DRADDGLFIEDGWEKFVGDAALNEGEFLIFTYDQ-DDF 102 56666..67789999******777555..45569**********..******************************98.889 PP ..EEE CS B3 91 elvvk 95 ++vvk Kalax.0174s0036.1.p 103 TFVVK 107 88886 PP
2	B3	35.5	1.7e-11	193	282	17	97
E--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 17 vlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 l+k+ a+++ +++ + t++l+ +W+ k+ ++ k+gr +l++GW +F ++n+Lk+gD + F+++ + ++ Kalax.0174s0036.1.p 193 HLSKTMAKSNkyklnldgkllkkhNIQ--MHPTVKLYIGGLSKWTTKF-VTSKDGRLYLGSGWTHFYHENDLKAGDECDFEFVLD--NRM 277 555555555544444433333311433..333777777777*****.6888899***********************7632..233 PP EEEEE CS B3 93 vvkvf 97 + +++ Kalax.0174s0036.1.p 278 RARIC 282 44554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.16E-20	17	114	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.4E-19	17	111	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.56E-16	18	107	No hit	No description
PROSITE profile	PS50863	12.534	18	112	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-15	20	107	IPR003340	B3 DNA binding domain
SMART	SM01019	6.3E-13	20	112	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.08E-12	191	275	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.23E-8	193	283	No hit	No description
Gene3D	G3DSA:2.40.330.10	3.6E-13	193	282	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.018	194	285	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.9E-9	196	282	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.798	233	285	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MTRQRTRPSH SAAGDVPPEF FKVYLACFSS HHLKIPPAFV KYCVGNLPER AVLKDVNGRA 60 WDVGLDRADD GLFIEDGWEK FVGDAALNEG EFLIFTYDQD DFTFVVKRYG THGCRKDVCL 120 ASNKEIVCAN LGDEEKDAGD HELAVYTDGS GGSIRNLRPL KSRLRISEKK AVAAKGDIAW 180 LEASGRIVSN CLHLSKTMAK SNKYKLNLDG KLLKKHNIQM HPTVKLYIGG LSKWTTKFVT 240 SKDGRLYLGS GWTHFYHEND LKAGDECDFE FVLDNRMRAR ICKQIRVQIR HI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	2e-25	B3 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0174s0036.1.p